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InterPro Inc protein signature databases
Protein Signature Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+signature+databases/protein+signature+databases/pmc12108012-145-4-1
Average 90 stars, based on 1 article reviews
protein signature databases - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Virulence perspective genomic research unlocks the secrets of Rhizoctonia solani associated with banded sheath blight in Barnyard Millet ( Echinochloa frumentacea )
Article Snippet: Superfamily annotations were obtained by screening the secretome proteins against the InterPro protein signature databases ( ).

Article Title: Single specimen genome assembly of Culicoides stellifer shows evidence of a non-retroviral endogenous viral element.
Article Snippet: These represent protein signature databases included in InterPro [56] that were scanned in an integrated way to predict protein functions and for which a match was found.

Article Title: Genome-wide analysis of the cytochrome P450 superfamily suggests its roles in coumarin biosynthesis and salt stress response in Melilotus albus
Article Snippet: Coumarin, a secondary metabolite from the plant phenylpropane pathway, was certified as an important natural product for plants in response to abiotic stresses.. Cytochrome P450s represent the largest monooxygenase superfamily in kingdoms, participating in various biochemical processes including coumarin biosynthesis.. Here, we reported a total of 290 P450 genes identified from the Melilotus albus genome, and these MaP450s were grouped into 9 clans.

Article Title: Single specimen genome assembly of Culicoides stellifer shows evidence of a non-retroviral endogenous viral element
Article Snippet: These represent protein signature databases included in InterPro [ ] that were scanned in an integrated way to predict protein functions and for which a match was found.

Functional Assay:

Article Title: Contrasting patterns of presence-absence variation of NLRS within S. chilense are mainly shaped by past demographic history
Article Snippet: .. Predicted genes that were annotated and considered functional based on searches against the InterPro and UniRef90 protein signature databases Dataset S2. ..

Article Title: Hidden Diversity in Enterococcus faecalis Revealed by CRISPR2 Screening: Eco-evolutionary Insights into a Novel Subspecies
Article Snippet: .. Additionally, we examined these sequences against the InterPro protein signature databases to identify protein family memberships, domains, conserved sites, and other features critical for functional characterization. .. We observed that 20 genes from subspecies A and 20 from subspecies B exhibited significant similarity to the same reference sequences from E. faecalis strain ATCC 700802/V583 in our BLASTp analysis against UniProtKB.

Article Title: High-quality assembly of the chromosomal genome for Flemingia macrophylla reveals genomic structural characteristics
Article Snippet: .. Lastly, InterPro, integrating various protein signature databases, recognized 30,110 genes (91.03%), offering an extensive profile of protein families, domains, and functional sites within the dataset (Table ). ..

Derivative Assay:

Article Title: Unraveling the pathogenomics of Rhizoctonia solani infecting proso millet ( Panicum miliaceum L.): genomic perspective on ruthless virulence and adaptive evolution
Article Snippet: .. Superfamily annotations were derived by screening the secretome proteins against the InterPro protein signature databases ( ). .. Carbohydrate-active enzymes (CAZymes) in the VAP-1 genome were annotated using the dbCAN3 web server , employing the HMMER tool for CAZyme family identification through a search against the dbCAN CAZyme domain HMM database.



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